Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

Added

• Added Module-Compass

• Added Turbo-Compass

• Added pseudobulking tutorial

• Added support for Human1 and Mouse1 GEMs

• Added list of core RECON2 reactions for faster computation

Changed

• Documentation is now supported by Read the Docs

• Updated cache computation for deterministic results

• Updated postprocessing notebook to use reproducible COMPASS output

• Replaced CPLEX with Gurobi Linear Solver

Deprecated

• Deprecated microclustering

• Deprecated torque queue

Removed

• Removed COMPASS transposed